Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10007579 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10007579 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8551
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8551

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001731	Metagenome	644	Y
F002433	Metagenome / Metatranscriptome	559	Y
F010982	Metagenome	296	N
F029109	Metagenome	189	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000757910	F002433	N/A	VSVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEERLNQLILELALKK*
Ga0114978_1000757912	F010982	GGAG	MIMVRLSREDEIVAHTAGLARESYYGSNPKFLGNKGNFHNAVVIHSEAVGAEMAVAKYFGVEDFVPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPTYYVMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT*
Ga0114978_100075792	F029109	GGAG	MAFKATKGQGSFRIEVEPYELKNLISTLNSLDKESQSRVRDAAQPLSKRLAGQLMMFGGSSPTPQTKLVLQSMLTPRDRLIRVDIGGPKKVGRPYGGTASKSGKGNKVGRSAAPAGALLWGSEYGSHSGIDRAGRRYTNRFKAPQNKSGYWINDAVDYYTPIVAKEYIAVVQGIINDLRLN*
Ga0114978_100075794	F001731	N/A	MSVFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTNIELINLDQSNVVIGINDSLTIELQDSTATYVPIFGGSVVEVGISVAELGNIAYAQRVKIIALGALARLPKALTNGVLTQAFDGTQIYKVLSGVLFNQWQQVPAALTWATYDPTETWANAQNTGLGEIDQPGNYELAARSSDRTDVYSLVAALANSGVGYIYEDAQGLISYADSTHRTTYLAANGYVNLSANDAQGAGLSIQQRTGDVRNAITLKYGTNSTSEVSATDSASIGLYGQLAQIFTTTVKHKADAQDQANFYLDLRAYPQYNFNQISYQLTNPEIDDGDRDSLINVFMGMPLAIADLPLNMSAGTYLGFVEGWTFQAAYNQIGVTLILSPLAFSLQAMRWNDVPIVETWNSVIPTLDWEHATQVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10007579

Overview

Ecosystem & Geography

Associated Families

Sequences