Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10005312 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10005312 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10306
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (30.30%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

10306

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (30.30%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000531212	F027756	N/A	MKLKDLIDRKILFINFPINRHAIQEGKVSEISPAEKCIKINNDWHLVSNIRIIELFSQDERPLLGFN*
Ga0114978_1000531213	F032548	N/A	MIYNKEMDKAIKILEELVIQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK*
Ga0114978_1000531214	F036564	GGAG	MKLGRVCVDLNYIVDMDNQEMVERAIECLYEDLMQGVKYGNITDWIDVIEDKNAKQDMIPEFLLEKEND*
Ga0114978_100053122	F032536	N/A	MSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYFNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRQNYHSLANRHHLVIDGKIVPYVGEQDNFEFNKKLGCYKDKTTGMEISLDKKEYEYVLDEIIFSLQMIVDEDNIDINLDRLYEVYPKGFDPIEDRQMFLTPQGDGTSLVEFESKNNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD*
Ga0114978_1000531222	F049419	AGG	MKLPKIDYLNLATTYILFGLIYGTIVALVWNYLFESISNIHLSILQGFGIHLITRILFGNTNTNYVSNFYTPKAPDLDKIDSYLKEMQEDLDKEADEVERQYEDLDKKD*
Ga0114978_1000531225	F096610	N/A	MANRPKTYFVKMTDNTNGTITISEAKVLDKVNQHARHWRSFDKRKLTSKLRSSDLVTR*
Ga0114978_1000531228	F016774	N/A	MPTKNNKIIINQEHLDSLNHWRNQILKMEKSYYSKDLEKERTCRNMINKYLDDVLDYNKNIKEKSKK*
Ga0114978_100053124	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYGFSLTNKSNISKIAERMYNFRPF*
Ga0114978_100053127	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10005312

Overview

Ecosystem & Geography

Associated Families

Sequences