Scaffold Ga0114978_10004485

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10004485
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11295
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F008303	Metagenome / Metatranscriptome	335	Y
F028085	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000448512	F002420	AGGA	MTFRETTVKYIKDILRPKTIYEVICAELQEAHLRKLEAETAAEYAHSAMHYNEDRIKRLESRLLKHTEDGGYK*
Ga0114978_1000448513	F008303	GGAGG	MIDRLILSAVLGTVGFNGLFPDPPPPLTLKQKAQERSISAMCNKKSKSKTTKSLCKRWKEQQNA*
Ga0114978_1000448516	F028085	GAGG	MLEMLVNVFVMAAMLALGSILFVFVCAMVGWMIYTTQNGGDDD*