Scaffold Ga0114978_10004437

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10004437
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11355
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005320	Metagenome / Metatranscriptome	405	Y
F042293	Metagenome / Metatranscriptome	158	N
F088893	Metagenome / Metatranscriptome	109	N
F099290	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000443715	F005320	AGGA	MSIDTLKPVKVAGEIFWSNWMNTFNTKFNEDNKKYECTIGNLSDAACEKLKELGINIKNKESMGNFIVAKSTYLFTPVDEEGNPVDIAMMGNGTKCHAVISSYRHKMSAKFGAAPSIKKLIITELKVYSPEGEEEQETADDIL*
Ga0114978_1000443716	F088893	GAG	MNIDKNQILFSVEGKTFKIKIGEDLDLEEVYTVLLSALMHLEDLVLGNTAHPSSQELH*
Ga0114978_100044376	F099290	GGA	MILDFEFKTGLVFGIEADELYIMDDENNMSEEANQVIYLHIGFITLAFILGQ*
Ga0114978_100044378	F042293	GAG	VNAITFEELKEALKRLDEVTLVELLGLQSDDLVERFDDVIEKKQEYLIKELD*