 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009159 Open in IMG/M |
| Scaffold ID | Ga0114978_10003704 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12477 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (80.77%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008607 | Metagenome | 330 | Y |
| F019308 | Metagenome | 230 | N |
| F024770 | Metagenome / Metatranscriptome | 204 | Y |
| F041730 | Metagenome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114978_1000370420 | F008607 | AGG | MDAIYTKVTEFFTDSVVFTAKASVDKYNKPTFSGNTTVTGRLIYDTVKSKDVQGVEVVDVGKFITNGPATTITVGHRMVVGTDTFSINAVDNISDENGAHHTVIRFGR* |
| Ga0114978_1000370421 | F019308 | N/A | MAKASFKLDLFGDKELVNALKAGKEDTPQAIAQAIYEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGSQGYFVDIFYGGPAASYALLVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQQNIKGRIIDIIQKGHRG* |
| Ga0114978_100037044 | F024770 | AGGAG | MAVSHAIVSVGTTATKLTSDYDGKDGQTINVQNPTGGATVYLGGEGVTTSSYGFLLAAGISFSIELQDDEKLYAVVASSTQNVNILRQGT* |
| Ga0114978_100037045 | F041730 | AGG | MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIMPVVIQKTFDATGSFTVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAAAYVSVDSYQALLTRYNGAEGIRVIVVDADEKADDAGTYATDASKAASALANYNTNQLMMMGV* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |