NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10003519

Scaffold Ga0114978_10003519


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10003519 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12793
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (68.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002243Metagenome / Metatranscriptome578Y
F004546Metagenome / Metatranscriptome433Y
F080901Metagenome / Metatranscriptome114Y
F102562Metagenome / Metatranscriptome101Y
F104427Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1000351913F104427GGAMNNKDLQTFIAAFDDFMKHFDAEELYYDGRKVYENHRAEARRIQEEQIEAKAAELEVTCDYYMMEFM*
Ga0114978_1000351918F002243GAGMTDFPTLHSKDGTMVVQYYPVKTPYGDISREWCLQVLSWEGVEQMSKKFLNRVEKSLAIRERVALGYVVTADNTSLPQLGNPFHGAC*
Ga0114978_1000351926F080901GGAMTEETNKPISTSLEEWWNSESCKKLQEASEASLQKAVGKYHMLSSEDKYDMVQAICYIMCEAEKEGISHRGLMDTLGIYPEGFWITELMDVHNALWSEFHKRKNDVELDREIKMLQDFTET*
Ga0114978_1000351934F004546GGAGGMPKEEEFPFDQFPWKLMHKDGKDGKETRKCYFQSEEHMKKHITRYNLKKKDYTIGYKYEND*
Ga0114978_1000351938F102562N/AANILHMPLGDIEPIKLIQMVVCLDILLGGDKELMIHWVNTHNKHLGYCPGAHLTDARMDDIIGYLEAMVEH*
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