Scaffold Ga0114978_10003459

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10003459
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12897
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039525	Metagenome	163	Y
F043830	Metagenome	155	N
F073237	Metagenome	120	Y
F082375	Metagenome	113	N
F085338	Metagenome	111	Y
F090290	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000345911	F073237	GAGG	MNLQDVIWLETSKGKIGILMVLDWHTEKLHYYMGIASGMNDNVDINHIYSGGVSLPDYVGMAFFFGDSE*
Ga0114978_1000345914	F090290	N/A	VHADTAVKENQMEKHLPFTTKSGLRIGCMYSPPPENHMSHDAELIQMALLGIEPEFSERRVFGFVAYIIFLGVLFTTLFALDLR*
Ga0114978_1000345918	F085338	GAGG	MTKDDAQKILDQIREGYGHAYTEACALECLNLTGDLGAHEGVRSKGVDETLHEEGYRARLRQRAIMVARSKE*
Ga0114978_1000345929	F039525	AGGTGG	MSETNMSPYIQGFDAGVDCVLTEIKRLEKIGPVSLEQLLKHLDPQLDQKTAQTPDKVAL*
Ga0114978_100034593	F082375	GAG	MTPKQFVNELFGEDWKPSQLASFLETIKGWSEDSQRYYAVRDFAKKLEFSVNPRDRVECREFDDLVDAKRFEHDLDEN*
Ga0114978_100034594	F043830	AGG	MNPYLNADEIKEAFRKIYLEESYNFLEEDLQKLADGFIMAALPMIIRTERDMCIKFVNTLNTNVARALGEYRENL*