Scaffold Ga0114978_10002866

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10002866
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14191
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (68.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007919	Metagenome / Metatranscriptome	342	Y
F010764	Metagenome / Metatranscriptome	299	Y
F035276	Metagenome / Metatranscriptome	172	Y
F037191	Metagenome / Metatranscriptome	168	Y
F063622	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000286612	F063622	GAGG	MKLHERLTEWYYTHDAVQSGDVIANEIVDVVKDWLKNYHKEDNNKYDFDYFSGWSDCIEKLEKDAR*
Ga0114978_1000286617	F007919	GAG	MTNKLKFTQVSRVICPKTGIHYLDSVDEYGNHWTAQQETGVERWITYKQLWEQDPQQPWDL*
Ga0114978_1000286619	F037191	AGGAGG	MTVAEWIEKLKEFPQDKEVKLTDGHKYHFYEGDFYFQLFEDVDGSIFVDIGIGGFEVKE*
Ga0114978_1000286631	F010764	AGG	MIKISKTYHLALTEDQAKELYQLLKTEKDSGHLTVDHELILVHHELKNLFDSGIR*
Ga0114978_1000286633	F035276	N/A	MMSKSYISCYNNETKELEHFEVSYSIFVYIRQLEDEIKYASGDVKKLYPFRFGDEK*