Scaffold Ga0114978_10002707

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10002707
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14590
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (37.93%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F016253	Metagenome / Metatranscriptome	248	Y
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y
F031459	Metagenome / Metatranscriptome	182	N
F039136	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000270720	F023575	N/A	MANSKGLALVYGAKGTITLWNQAGATPGIVLSGAISTIESYDVTHEADVEQIKNSSGEVVAQVSANERISLNVTFIPSGTTSAIAKTGSSLPNVNGYVVIAGADATTYGGVAINGDYVYSGGGSVKFTSSGKAMVTMTVTKYPSLAGSATVFDLAV*
Ga0114978_1000270721	F010835	AGGA	MNAVALRTERALVDWLAAEDWSASPIGTPTCLTSYGHGAFADQDLEDQMPSFPRIVVRASTAVPVHPLDRTCEVDVTATLQLSADDTSEAHMLAIVQVFENLLQYLYVDGNIAELNALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI*
Ga0114978_1000270722	F013879	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLAQAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKEGKPGLYGADMRKAAGALRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNQALINLANQYGLPQENVAMHRGSSAYAFNAKAGFNPSSHVRMNIGLADNQVGTVEGIYSKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT*
Ga0114978_1000270723	F007260	GAG	MGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGVNVDRLLQESGSLLLKENTDRLLLTFGKMMPVVGRLLTYDGRQMRIVSAKRDGSGAYYALELGSKTK*
Ga0114978_1000270726	F017997	N/A	VNFIEQIVTALLKWLTGFVQKPPTVEDAKRDPDLKKKLLDRIAESNR*
Ga0114978_1000270728	F031459	N/A	MQTDTNNSSGVGISLATAAAAGAVSFLPQLTQWFQLGAAILAFIAASIGLYKTFKK*
Ga0114978_1000270729	F001272	N/A	QEQASGLLQLIDIAVKAGGIQNAKVALPLVDLIVNAAQPKSE*
Ga0114978_100027073	F016253	AGGAG	MSDRIQSIIKGGTGAYSISKKEAGEIHKAAKKVKNYAVSYWARNRKNKEVK*
Ga0114978_100027076	F039136	N/A	MNSIKIRYVTSVFTPAGWRGVVITAEASKTSEKMALVVEVLEINGESPKSQMSRTGATRQRFNGRGISCREVGAKKRLSACEIL*
Ga0114978_100027079	F013412	GGAGG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLSNGKSYAQRVTFRSFDVEDMDSVNLLIEGTHIMFDGDCDAVADKSSTGWWYANPRVTGRISEIIPSGHES*