Scaffold Ga0114978_10002629

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10002629
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14797
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F031026	Metagenome	183	N
F044969	Metagenome	153	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000262913	F093768	N/A	MAENPPNAVISSRSQPLRAIRPTPDGVAITTDYLNTIINRIEDLVLIAKSQKPIPGNNVQINFTSQGAVINAVTQ*
Ga0114978_1000262916	F044969	GGAG	MSASLTVNPIKLQKALKAFVGNTKLEAAKEMRIQARSLCVSLANSTQPFGLNSNAKAKGEKAVTRDIDRVYKTAPTAVREIASLPLPRGKTATQNAQQAAAALAGMIIGKTFGKGKKGFKAQTTAQGLLNRLNYKPYIYTKIGQFDGGLAHRQSRYGKNQRVPKNQYVRQIVTKENELAKYYKEKRGNVGIAKAGWAVCAGILGGFRGIPKWVYRHTGGGRVVDMSQAKPGVFSKPYISMTNTIPWISNVISKSTVQRSIDIQVIKMIKRLYIIANYERKKAGL*
Ga0114978_1000262918	F015449	N/A	MIDSFWGTTNIKVAAAASAFGAKLRETDPVTCIVKEDGHRQFTFWFSISDGEEAKAEMQRTWADMKCDPESPIRYVRAALENRETLLGLMKRAEPIISIQRGGQTLLVSEKASPELKRAILKKL*
Ga0114978_100026292	F031026	GAGG	LNWNAAKDKGTSMPGGRIALPLILSLALASCATTSQTQDGPPPSQDSISYFIYAWDKAERTNKPCPQAYRDLFAQSLKALSDSLAETERERARNQ*
Ga0114978_1000262920	F007911	GGAG	MAAVTMLDRLIEAAFQELLSAAVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIIVDDSYDDTTLDAHTQKCSKILQAFYDSSSLATRLNATTAIGSARCFNAKVESSEAEADDEERTMRRTYKLAVIAYPNSIAS*
Ga0114978_100026294	F006891	GAG	MSTDQIAELSERLSVVRETLARVETRQSVVLDLLERSQASLGEYHGRLTQMERDAHTIKTRLWLVALVSGAVVSTAWELIKRRLGF*