Scaffold Ga0114978_10001480

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10001480
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19753
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (58.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012023	Metagenome / Metatranscriptome	284	Y
F019433	Metagenome	229	Y
F023035	Metagenome	211	Y
F024537	Metagenome / Metatranscriptome	205	Y
F042301	Metagenome / Metatranscriptome	158	Y
F048947	Metagenome	147	Y
F066485	Metagenome / Metatranscriptome	126	Y
F100345	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000148013	F023035	GAG	VNPVTKTLLIVLGSILGIFLVPAILIIFHEYIDAFIFITSVLACFMLFGYYSYEELLPEFQRAQLEEDQIMARFAGNPEKIRFYRAFKKHFDGDLNLEQLEKWLIDHPRKH*
Ga0114978_1000148017	F100345	AGG	MMLDSQRLITLLKGPDWYAHQSAKELLDILNQGKRKRYKSMSAMADRHIEIIMECFNHEDSIRILKTWLSTYRLPLNPDRLKTFEQFHNRVGKLAIQNAQSIRSY*
Ga0114978_1000148026	F019433	N/A	MVTDKIRIGSLNEILATRVRTVYPYRVNFDNITRNQIEEMSLWCINNCKDLWREEHYHALYFQFTDDYDAMMFMLKFGGRGNV*
Ga0114978_1000148027	F024537	GAGG	MNLEKQILDELGTKMQSEIDREVMWGMLKSLGWRRVNLDRFTDNHHAVDITYWLAEHCNHAFERRGADFIFESEVDAVNFTLRWK*
Ga0114978_1000148029	F048947	N/A	MNSAQTRRYRRAFRTLEHNVLIDANKHRAAGNWCAAQFGKRWEAIGKNTDGLWTMFWAGRDNHDKYIFHFVEEQDMLMFILKWS*
Ga0114978_1000148036	F066485	AGGA	MKIGFSLGRCIRDIVNEKISIDDVAFIITSTSIHTKEQLADVILMYTSEPTYLYNCDYDQCVAVANMLWDNNRLLQPRRQGLQRHAQPENAVWVDMFPTQLSEKQSVKSAWDAYRFMLHMTENVDNEAVEVFKQ*
Ga0114978_1000148037	F042301	AGGAG	MIKTGSKWSSVTGQEFRVLDVIEIDSHTWVHYIKENAPEDDIREYSCYIESFLSRFREQPND*
Ga0114978_1000148041	F012023	AGGA	MKQRDYLKLNEHINEQAYESLFGKELTEEQLQKLIRDKFERARQYHEALAKAPTFSVY*