Scaffold Ga0114978_10001150

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10001150
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22346
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009958	Metagenome / Metatranscriptome	310	Y
F083883	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100011501	F083883	N/A	TTEEVAPEDEVAPEVPVEAEAVTPSAKKTIESVVKETFFAEIEKLTQENIELKAQIELLSKVEEVATEATELSDVKPIAFNPENTNEVEHFQYGSKRPRTIMDSIIEKLNN*
Ga0114978_1000115016	F009958	N/A	MENRNLGIWNRGWELTYEFLGWQYSMSGTWEFNDYDEVSEYAFIELDVDVSEKWIIETDDHLQPHILGVRILEDLRLEMQEIINSDLANYDFWEWKTSNDDSNYNFYHEL*
Ga0114978_1000115017	F006463	N/A	MKAGTIYDQLDWWQRQWRGSFDLMLYLEICRIKKNEQIKFKPMKRYKATFKTWAYVGAPMKLETRIVEAYDTQHVKNLIQKNDDIIIEIKQIEK*
Ga0114978_100011509	F007860	N/A	MKSNYLAVLYFIAGFLTSFSLICQGTELYINLAGVTLFLYLTFSLTEALEDLGL*