Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10001128 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10001128 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22492
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (78.57%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

22492

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (78.57%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F014840	Metagenome	259	Y
F031359	Metagenome	182	Y
F043777	Metagenome	155	Y
F049426	Metagenome	146	Y
F080877	Metagenome	114	Y
F089892	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000112812	F014840	N/A	MIPFSYAVVDDEGEVIRKYRWSVKEAKWFTEKNPHAKVIRLEQEPKQTSTQIQQELFNLVGEATY*
Ga0114978_1000112814	F006587	GGAGG	MDFRYEGTGFVVVGFIIGCCLTWAVMQSMHVQKKYKMNLKCIQGELYEEIRPNFYVKSHLECFEQRSF*
Ga0114978_1000112815	F012016	AGGA	MEQQPYAWAIEEFNSDGELVWSSMSNFRPTELSWIRDLPSKKHNIVLTPLYKDESKAEKITGIKSYKESTQKMMEAYNGL*
Ga0114978_1000112822	F049426	GGA	MMKTKPIYKDYDREIYMSEFTTIPKEKYRRMIISEVLGWGIAVFLLLITLLR*
Ga0114978_1000112825	F031359	GGAG	MVTTEKKKEKQIIVEQVIVTGYVKHANGRKSPFAFNKNDFEAKDLQSILNGVGRIYQ*
Ga0114978_1000112826	F080877	GGGGG	MNNIDRLERDIDPPEPQEPIRIKSWWLSVKWEDGRIEEIALPAEFRQAGKDIENFLDEVEYEYNRDILEHQAQKYGDPDGDY*
Ga0114978_1000112828	F043777	AGG	MKLINGTEIIDNSPNEKAGELAEAIYDDVIWLLDIEHLCIQDDEDGNTSDTEYGQDLFNAIYERCMAYFEREINDL*
Ga0114978_1000112832	F089892	AGG	MKTTPTQAQQRHDAIEILRNQLRPQKAYEVMKPTAQSVNIIDGTINGHGVKFVFYYQPTKADMANAHHATKNLENNLRDGVAKRKAHLFNLVENDVTEYTDILTINSKDLDELKNESEALNERE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10001128

Overview

Ecosystem & Geography

Associated Families

Sequences