Scaffold Ga0114978_10000911

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000911
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24852
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006894	Metagenome / Metatranscriptome	362	Y
F017442	Metagenome	240	Y
F017592	Metagenome	239	Y
F064409	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000091116	F017592	AGGAG	MMDDGDYGGIDEFMHYVTIAVLFLTTTVFLGAVVGLMYWAML*
Ga0114978_1000091131	F064409	AGGAG	MKLFKLKGVSKKYALRAAHYRRAARNQGVAGLAFDENALRELFDWESRGVGSVDKGKNGFAYGKWCVDLSVSMWVEDILKGDFCKAEFLETRIQKLHNKKKLDTITAAVFFPYADLLDRRRNT*
Ga0114978_1000091133	F017442	AGGA	VLSENASASTTTPSKRKKKSINFYDPFKRVDPKLLEQMYRAAQKEKLKQLPEALL*
Ga0114978_100009117	F006894	AGGA	MKAEDNKTTGKFTWNYRIVNLKSENGGEDWYCLTEVCYDMNDKPTGYITPYLGSDSMEGMRNVWDMMGEAMVLPPMQEEDFPK*