Scaffold Ga0114978_10000750

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000750
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27238
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (52.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F028512	Metagenome / Metatranscriptome	191	Y
F051684	Metagenome	143	N
F096618	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000075020	F096618	AGGAG	MSRMSELYLDIQTRLEKGRTAMDIARELEIPVSWVYEAGETVEEPQEVLSPFATINS*
Ga0114978_1000075027	F028512	N/A	MNNELKAIAVEAGAPVEVLNTLWFSIFCQKFAHLIIEELEKDGVEQ*
Ga0114978_1000075031	F051684	AGGA	MYAWIIKHQDVISGFVSGVSLMVAADYFARGDMAYGSLSLFVSVVNLLLSGKKMGQHRQSN*
Ga0114978_1000075032	F001957	N/A	MATNLIFRAKNLQEFTVTTEVPNGVRFNGVVPFDINITGTMLEARVWAVDFNEAVDRLNEFLQNDD*