Scaffold Ga0114978_10000475

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000475
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34216
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031091	Metagenome / Metatranscriptome	183	Y
F032541	Metagenome / Metatranscriptome	179	Y
F053885	Metagenome / Metatranscriptome	140	Y
F066569	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000047540	F032541	N/A	MSLINEIKQILSEVTTVNFQGQKFVLKVDVNEDPNKKGIKVQFLPTQFDGMSKQKQDELAMALESKLDQGLQSIGMKVERDRQLKDKTIIGFFIYIEYVDKIIRQALAQSSQPQK*
Ga0114978_1000047548	F031091	N/A	MNKLSKTFTCEHTGIKTTYNYQNSIVNGIKSVDIEYPKEYLDAFNRKEKQQSTLPKTKQMFLNPKTGKEVGYYRAKNLGLVK*
Ga0114978_1000047550	F066569	N/A	MNRDQYMQMRKTGQYDLGWFYQYYLENKDKDRMTPPFEIFHQAFNMYFQMNGVAVLNFLDKKMEVTKIENEQGALLYID*
Ga0114978_1000047552	F053885	N/A	MEGTIQTAKELAGKLNGNYIQVIKKNGKTHDKLYKDPQRAIRAVGGVNNVKYLREVLKEQVHAKYVEVDSLTGTPENEL*