Scaffold Ga0114978_10000470

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000470
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34314
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (71.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012435	Metagenome / Metatranscriptome	280	Y
F016520	Metagenome	246	Y
F017968	Metagenome	237	Y
F021293	Metagenome	219	Y
F051918	Metagenome	143	Y
F065786	Metagenome	127	Y
F069850	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000047011	F017968	N/A	MKQQQSLIEPKKASNLASLSSLERLNLQETMRHTEALEWIRRYRKKALEEGRGEAQYWWQQTLADIAKRRGQAAADDLRRRMNEQKDKK*
Ga0114978_1000047016	F069850	AGGA	MIISQISSENATFINVLHGITALVTKVTKGYAVTLIDTDAKKIVATKIYPLTMFDQAVAYAKKIANV*
Ga0114978_1000047021	F051918	GGA	MIEHIKDYWRMPSAKELAAKELEQAQRKLLDALSAQEYAKRMADYHSDRIKRLTAYLKDES*
Ga0114978_1000047024	F016520	AGG	MNTPACPKGLIEFECEIEGVDLVCFLEYTPFESGSLDERGLPNEPDVQESMELVNAYVKNTDVDIAHLLLQYLVDHITETALEDFKND*
Ga0114978_1000047029	F065786	AGG	MNKDDLITLLRITGAQEAAIDAVCAAYDAGWNDALDNASKRIVGLPFGDTAASFAVFVKQAKTQA*
Ga0114978_1000047033	F021293	GGA	VIQLHKWFPFVFPKEYDVKQVAFEKRVERLEFEYAQVVKAEKVREAVEAYDLELYNKRARQTTIELEIFSNGRNFDKYV*
Ga0114978_1000047035	F012435	AGG	MSDIDLVKYGVLWQKVESMEAKIDKMEAQLETLIELANKGRGGFWMGMAFVSAISTLLGYISHYWSK*