Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10000412 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10000412 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35776
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (38.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

35776

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (38.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F016115	Metagenome / Metatranscriptome	249	Y
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F037078	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000041220	F024954	N/A	MKDKEMKNIIETLVVGKYYQIQNHIAICEMLNSTSNKKCLSRISGVGSVLAFYDEVTEVEMTPELLKECEARKNGTMNFIGSFNASSKYKGD*
Ga0114978_1000041222	F024058	N/A	MRENMRKNTDSSESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLNNAKLVKENK*
Ga0114978_1000041225	F037078	AGGA	MKNQLNITKQSFGDTTAFLLEGGKGRITSFHNALYNWGATNGQLHDMGNGKAFYFYANPDAVLHALVKIALHSLCNKINAKGMKGGLMSLAKIKAQGQFDNIIDGRFLSASVSNDTYGFGTITAEKPSDYCGAVSNGRD*
Ga0114978_100004124	F016115	GAGG	MVGRDGDVAIYKKQLDEVDSEAFNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTNREDADKRFVQLKEKLSAYVATSTLANGEKRGRGRPRKIDLTKTELVVV*
Ga0114978_1000041253	F009669	N/A	MLSKIFGANWRSSTSGVTTVVAITTAIAIHSDPSLVAFLPDIAEVYIIGISKLVAVVSGIVFALTVKDSAVTGGTVAQTIEAEKRTGENI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10000412

Overview

Ecosystem & Geography

Associated Families

Sequences