Scaffold Ga0114978_10000360

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000360
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37985
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F012668	Metagenome / Metatranscriptome	278	Y
F026565	Metagenome / Metatranscriptome	197	Y
F067746	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000036031	F000340	N/A	MNIHDILKAVLPIVVACLAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEARHKLRNEIYTDIHQLQVKVQLLEEREKYGKK*
Ga0114978_1000036033	F067746	GGAG	MDEIEARLNSHEAVCAFRYETINARLKRLEKIMIGSAGFIMASLIAVVLKL*
Ga0114978_1000036040	F026565	AGGA	MAIFNKNSLTQVSGFDNPIIAGELVWEQSTYWNLTITATNNTTPIDLTGATIDAYIIRRAVSNILDTRNGLTFDIANYDPPPTPIALTVTNRDDAVGFFTLVLGNDTWDVMNDDPELNINAQDCVGFSGRLKISFPEVDTVPQNDYIIFLLFLVRSDGIVVEG*
Ga0114978_1000036044	F002085	GAGG	MNVITPVDNTNNIRIADFVRLTTPTETFRFATTASVLTVAAVDAQPFEAVGQLIKIGDATKDIKSTANETTVTLVGIDTAMLGLVLGQNIKGSQIEMWHGFFDTDGALITAGGSGGLYQFFNGYINNMSISEQWMEELRMFVGTVTVSASSIQLILQNRTAGRYTNNNSWTFFNPTDTSMDRVSFITTINYQFGKTA*
Ga0114978_1000036045	F000934	GAG	MSLNQILAISESVQVNDHRFVGQMLSRNQRISTSEILTVVPFSFDLKPMNYLLYSKNRALLNSLRIPDMALQQYLNFGTTGWSNYIAYQGSMNSGQISACQWQSSSANKNLVLGSLPSIDAGAYIVKAGDFCQVGLYSYIATADVVRGAGSTVNIPVHRNLITTISSTVNAVIGEYGTTVSMGGSTYTGTTFQVILRAYPTYTLMPMKDDSFISWSGSFTAFEAVL*
Ga0114978_1000036053	F012668	N/A	MGIARFENLDINNVTNSIDDVGQQTTSTTKWFSTRARVGDVNNSLRISDRYRVYSDLVNFTFNYTPNLKQIVDDQNLYSITWRDRDWRITDIRESNDRMTVMMLCYRNDPTIPV*