Scaffold Ga0114978_10000118

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000118
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63363
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (24.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F008080	Metagenome / Metatranscriptome	339	Y
F014128	Metagenome / Metatranscriptome	265	Y
F028094	Metagenome / Metatranscriptome	192	N
F038674	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000011838	F014128	N/A	MEQLQKMGIQIGFLISGLFGSILMATKNDKTDAKSVVLSLVGGMSAANFLTPVLVDTLNIVNVKHQNGVAFIAGFLGLKLVELISEKFLEKVSGTQKRKTPKRKPKKS*
Ga0114978_1000011839	F003904	AGG	VKTLILNIKKYLLVVLLPTAIFVILALSSLKEIEQGYARFRFGRDITLYLRKSTDQLTYLGAAYTTTSDKKFLDQFNSHLKEREKYFNEEIVINKMLTQEELKEFRKGLDISNDLAKDVENAAFEKMDGKAFFGDKYLDYKKKIYDNINSFRGLINDSSEKIIKDEVKLLNIYLYCLAGIVLALVYLIKHDNIVTVKKKPIKKKKK*
Ga0114978_1000011841	F001732	N/A	MKKLLFLPFVLLILTGCFSTIKPSKQIDDNQKIIAKEEKKVDNTLVDIEKNDKGKKIQTSALAQGIQYSLNQVTNPPIQVDTAKSLNERVVSIVGSPHIDEINRIKATVDLLNSAVEEERKKGLELLAKRDELINKLQKEKVELNEQYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVNPIAGAAFSIFNMLGSAVLSLIKTLTPKAFEMSNFSTKEKVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSEILKRFDKEMDSHEKDLIEEILREQKWIK*
Ga0114978_1000011848	F028094	N/A	MQKEFDFRTPEEVAEHKKIAEENEKAFDLMFNSDEPVYNKYVDFLLDLIPFRLGWKARYWPSGIRWWAKCKYQKIRYGVSDDDVYCLGYNIALFILPRLKYFKKKGKTGISCCFLPDNFHLLEGEQQTAAEEKGVKEMNFAIDEMIFAFEYIIDGDKFCELPESLSFKTKGLNLNSEKTIEEKQAWREYMEKANKLNERKENGLMLFAKYYGILWI*
Ga0114978_100001187	F038674	N/A	MDRKGFFKTLFGGFVAASAAPSLIKAEETPQPPKDLSLSREVLRIDEHGNLGIGGSSNIGLGTSTPRNKLYVEGIVFHVNDRMLEMAGDENGDFKIHWLDTKENEFASSVIIKKPKDDLWKTNSIAIY*
Ga0114978_100001188	F008080	GGA	MLKIQIWMRGTMEYSQDTIPGPTPDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNISNDEKPVFVTSNWEDFEFEKGGGSNYVPEAPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED*