Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10000114 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10000114 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64164
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (9.09%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

64164

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (9.09%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F032658	Metagenome / Metatranscriptome	179	Y
F078727	Metagenome	116	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000011444	F002045	GGA	VIENKIMEFFCVYCKTRKKFDKFIKVNRVKNKYIIDIKKIIDEEEVDFDNDRTYLKILIFNKIQQAIEKRKDIYYIPDFDNQFSIEKLLNLKKILGENNFNVLIFYNEFRKNPEIMDDVLGNLSKFSNSQIIRDY*
Ga0114978_1000011447	F032658	N/A	MLKKYTQFINEEASPRLPKNEDYWLKKGKTGKKVALYTHDDMDGIFSAIEVKKYLQNSGFEIVKYGIINYSEGWKYTSVDPKLINVVVDFANMPGDERDEYIDYYLDHHGSFTEFELDKYKSSPIQKKKTASAYEAICQNLGVPQDELTLSVIDMIDAAKYSEYEVDWSRLLDFNLAEIKKSDRKRLEFAAAFNQFLKRSDHKTLISVIHNCPDASIYSIFNVMKKVYPEHNVFPRSDQKKDFLADSEWRLGQMAQRTRGKNVTKKKYTSQSRFLKDFTVGNSIKLDGYQIIGDLAFVPTGTWANALRARTIVSNDFKDGLISEEPKFILLQYGGTLQVCSYSKISEIEGLPTYKDGSPINDLGSYMTGLLKNFQTHLGYHNPDTSIGQDEITVSGGHGGIGSISNIFGECKVSPYEECRFIDMFKNKVISDLSGVQFGIKTKWSEPVEFKGKEPQMDNKVLNVADVTKLDPQGNIIEESFNYQIKDKNGNTKDVTREEFVRAGHEKAMKPKEIKIDGKKIVAKFEKFNNK*
Ga0114978_1000011458	F078727	N/A	MKHLKKFFESNETEKEDILENFISISDKFGEPEIYSTNYGPNKKWSLSWNINLNLSVLQESQQLIKKLKDITEDIDDVLAASSRLESYNINMSLTDKLKIELVPKDTGDNTFKFIKGYESRALYVRINEVERFFNSRGLRVVKWDNESSFDEVNQTNKLEISLNKVDNNVTSEFYRLIMAELNLIKDRDYQMYVNGNDIVIYPDEEKAYVEVTNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10000114

Overview

Ecosystem & Geography

Associated Families

Sequences