Scaffold Ga0114978_10000080

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000080
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74564
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (13.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021773	Metagenome / Metatranscriptome	217	Y
F026554	Metagenome / Metatranscriptome	197	Y
F027850	Metagenome / Metatranscriptome	193	Y
F032189	Metagenome / Metatranscriptome	180	Y
F039135	Metagenome	164	Y
F041198	Metagenome / Metatranscriptome	160	Y
F094901	Metagenome / Metatranscriptome	105	N
F101151	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000008010	F027850	N/A	MRNFRAYNKQELFNYVEKITVEKVNNQVFTKYDGRVMRVTNVSNRYEVFDIVKYLKEKIEVIESNFPIRKYRLTITRGQQYLQLVSDSVNIGGVDFYKSFYILNSSDKSRRLSFHVGLHSDKYYFIGANNASISRKHLTGVTEAAEEASVGLSGETFNEQIESLQNLVGHRIQFSKIRQVILGEKEEIPQVNHRKFDAFKNSIRFSDSDGLIKLTREQRSQLYIDSEKMKEVSEDFYLDAFWVFGTYMRLFNKQDSHIIKNESDRIMKITQWSVRNSVLEALGI*
Ga0114978_10000080109	F094901	N/A	MKKLLLGALLLLSTTKIFSQNVTNFGLYIINPTNCPYSITGYWVDSIGTSGSLFFTVGDTSSVFQDVWYGQAASISATSTMSICVVPAPPCNCPPACIQQIPVTQGSYTILLCDSIVGIEEQPISSLLDNKYYDLLGREIKDISTYSINSFYIKNGRKYIKIGQ*
Ga0114978_10000080112	F032189	N/A	MGMSMGEAMMSEAVSYRYENKEYLLKTIMNQLGITDEDLENDPSWVKAKVRESNIDKVLQRGPL*
Ga0114978_10000080121	F101151	N/A	MKHLKPYKIFESEDFDIEEIIKELFLELEDNGFEVKVEPNYSSTSRDKVFSYNVMIKKQWGDIGNMLSEYERSNYGPVFVLRDVLDSIVMCSGYLKDNGWHIWDVDGLALNKMGRYEVKDVAYIANLDPRINFQERGPEPLFDVEMVRLKLIIRKKK*
Ga0114978_1000008028	F041198	N/A	MNKVKCLNTSKYNRYDGLPLTVGKVYDVIDITRIPFNASRYDDYSGPIYNLVNDKGEISGYSDECVRLLTLDEVRELKLEDLGI*
Ga0114978_1000008048	F039135	N/A	MRKIKTYKQFKESLVIDLNFQNVEDLLESLTIWHDALLNAIRAEEQDIFSTLKLSDDFIDKLQFDDLQDSVEFINTLSSIALKKSTVQNSDDYQTFLNKPCKFMFLFDINSNELENPNYLLFQVWNDTLDKWEDIRLYKVNDDVKKFYDKLTSRTIEITDADQNYIYQTSNGNEWVLQNVDKENDTFKRSFRKEELQELLRDKKVSVNII*
Ga0114978_1000008049	F021773	N/A	MKWIKDYQLFKESKNFSNKNIISDICVSMVLLNNEFLDNLLDRGLKARYSENSEIFLTDLKNLLLAKNRLSLGRFEDNKCVVDDELSKINEIFENIQFDIEKDWNMLTNARLTARNIIDKLLPDEKLDSEKIKSVYWIGPNKNEEYSEDIVIELNDERQFSFFLNKNLSTQKSASFNTFAEELIAEDLEKMYGEEYLPKWNKLTQEWIKTLYEGANKNIQQYIERFIDPKRIDTIEYFDYFDIRHKDPRHKHLGEYFKEFDKNILKFSDLLNEIWKNRDICFIDSGRVYKQWMETKVVIMNSKILENLLTNSLKSKYSDDIVMLDDNFKIANGTVKMKLFKTLVEKMGCLERPTFYVGNKADLFSMVPSREFFRKFYDDLDILFDYHVNFTVSEEEDQNDFNIKIKLELDESPLMDMSISVKFSGGEMSGKLSAKYKFELSPNFNYQISKKDSKL*
Ga0114978_100000806	F026554	N/A	MKLDMNEIYHNYIVRIVIFALFTFKRQIRQPNVYKISVIKFTIKRLPWKINLIIDTGLKLDKEDEREILLQELLDGVESDYLSTVTVTFTTPLKQVTIGVDLKSESKYEAFLYS*