Scaffold Ga0114978_10000028

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000028
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105729
• Total Scaffold Genes: 154
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (12.34%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032150	Metagenome / Metatranscriptome	180	N
F032189	Metagenome / Metatranscriptome	180	Y
F033038	Metagenome	178	Y
F044482	Metagenome / Metatranscriptome	154	Y
F076095	Metagenome	118	N
F077296	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_10000028121	F032189	N/A	MSRIDAGEAMMSEAVSYRYENKEYLLNTIMNQLGMTEADLENDPSWVRAKVREANIDKVLDTQN*
Ga0114978_10000028123	F044482	N/A	MKYLKTYKIYESLEGTDISIDDFLEKIRIPESKRPQIINWWNENRRDFIIHYFNFSSPQPIAGVFLGENIIAINSRLPMPPHIKLFLALHESRHCDQHREGRFMEGYYNTVVNGDKESFLQTYTDSERDANDFAVQSMRECGFDSEMNFEEMRLRGNERAGDMVYRMMSNDIERLNPVDFFDLLKKQIGV*
Ga0114978_10000028148	F076095	N/A	MRYLKRFNESMEEQIYQQVLDTIKDCFQEFEDNGWHWIIDPSSVYGGEQPGISVYHSPQFNCRMMHKEESDPRNWGKKKDRKDFIDWTGKITSDGEIVWESKDLTDSKFNNITEGDLMEEAQDFLVAVKRIHDDTGLDFNFSYNNRGGERRIIIQGRI*
Ga0114978_1000002823	F032150	N/A	MEKLITMKNMLTIIMFTTILTGIFTGLLNNRANNKISQTIKGKELIIDSLMKNPHIDTVWLQLPEDSIKVQIGKQLKKIQSQRDRNKALKEYIIFLENENQFLGSVLAEKELEDGIE*
Ga0114978_1000002841	F077296	N/A	MKHIKGYQNYDKTNEEVLTGLALIAGVFGAIFAPSIYREAKNFWSKNVVGSKYKETGNVEKVICQFDPETISPAVSSLTVSERERGEVEIPLKEYKDIFGNICYGYEHTQGSESRGEKEELYTAMYRSEDLPILKEWLADGKRYAGKGTKLELKPLDLIYIGDIRRVSSSGTPIGL*
Ga0114978_1000002852	F033038	N/A	MKWIKFFEDFKNNNEEGSLITIDDVVNCIKKGGLIYSTIIHDYPDNSPEEPLKPVDIDEDGLVTVEIDGKEYTVDLNDIEKIEM*