Scaffold Ga0114977_10112768

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10112768
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1643
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007027	Metagenome	359	Y
F012572	Metagenome	279	N
F064493	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_101127682	F007027	AGGCGG	MSESIRFECRSCKKITEQLERIVTDNLPPNVKVLQCKTCSKMSVCLLVNYADV*
Ga0114977_101127684	F012572	N/A	MYPGYFNDCNGDTMSDSYELINLKEMTGKLFVNGELAAEYKVEQCDKCALVAQLDKFGYQKNSYENIIWFCKGCR*
Ga0114977_101127685	F064493	N/A	HFWVENAVTSAYGRVIGLLTPGGIARSTKQDMEKVEALSTKDVAPVSDDLWATTPEGVTAIDTAKNEVGRLQTNPECKHGARVWRTGTSAKTGKEWANYSCIEKSKVNQCDPVWYMQTSTGWQPQV*