NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10086518

Scaffold Ga0114977_10086518


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10086518 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1910
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F015095Metagenome / Metatranscriptome257Y
F029049Metagenome / Metatranscriptome189Y
F046904Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0114977_100865182F029049N/AMSRVAKVILDRSQEITAHRVGLERTVLRNADPKDASNFGQTYSNWHELVWQEAEGCGAEMAVANFFGDYAYVPQVDNAHDTADVGENIEVKWTKHANGHLILQNRGAGRPHDVAILVTGLSPVYILMGWMPVHMAKQAKYKHPYQNNYWVPRSNLFEMQYLKRSNYGL*
Ga0114977_100865183F007029GAGGMSNFLAGYEDVNARIKRFRAEFPSGRLVAYIEDIDIIKGTILVKAEAYREYEDMVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRVIGLLTPSLEHNARPTAQDMQKVDTLPADSDPWSTKASIEDMATMASSLLEIGAQLGGELVPEGPRCSHGTMIWAEGTAKATGKPWAAYKCTERVRANQCNPIWHVMTSTGQWKPQV*
Ga0114977_100865184F046904AGGMNSLDLIVVGMVVLFMGLFIYAAYEMGYKVGLGEGFLRGRNIAKALKEAEAKR*
Ga0114977_100865185F015095AGGMEQAQLIVGIAVGGCTILGLWAGLIRKMVKYYLSELKPDGNGGHNLAGRVERIEARVDRIYEILLEDRLAK*
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