Scaffold Ga0114977_10052787

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10052787
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2516
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F006984	Metagenome / Metatranscriptome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100527871	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISTMGFPTKITQVSYSNPVFSFNNIHSYKDDGITDEEYACQPNR
Ga0114977_100527872	F001125	AGGCGG	MGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRITISQMIGDEWASETGWGISVNQLADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSMV*
Ga0114977_100527874	F001043	AGGAG	MSDYKDGFEDGYKFAREELMEKLAEIDIADIDSWILDRLAEMIEGGNL*
Ga0114977_100527875	F000311	GGA	MYFELTAPDRLSLEMAYWDAQIIGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDRESTGYKER*
Ga0114977_100527876	F000980	N/A	MSVGACIILDMTKYQKYTWVCTSDCDALIEYTFKDGYGWPAGVMDLTCRCGTDCTLLSVEDATIPYTDTPLTKEETMEESTSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKQNGVYQDKINTVKDIITEAYEDSDDKDTLRAIAEALSIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNIQIDDTEVCHVREA*