Scaffold Ga0114977_10022785

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10022785
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3926
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F009531	Metagenome / Metatranscriptome	316	Y
F009882	Metagenome / Metatranscriptome	311	Y
F020910	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100227851	F000684	N/A	GDLFTTSKTGVTGRIVKFSPINSKLTRISLQLANGSRRLAMVSTTK*
Ga0114977_100227852	F009882	AGAAG	MGSELQDAVTIDKLEVPYNSNLLVTYKAIPDTYAAPEEPTYLTSKVTEIEWELHNGRTNRKSLQNLQGTVNSLEDLIVEWYDPNYSKEEVLVALCEHFGIDPVKQIEVQGTVTFTGTINIPMSEIADFDLSNVSIEAELSSYDYDADLTVDEVTVEDAY*
Ga0114977_100227855	F009531	N/A	MTLTAEIYEMNYACSPGGVDCWEATIQGYGTSTTVSDFKTAGKALNYVIDKYPNEVLNLTVMSLPAYEKTMTSYVD*
Ga0114977_100227859	F020910	GGAG	MQNWAKYTFVCDPDECDSLLEFTARDGYGFPNGVVRMHCPCGREMIYIKVEDIESRFYEPVIKVTPPKVVKINSNPYN*