Scaffold Ga0114977_10019696

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10019696
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4238
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F044984	Metagenome / Metatranscriptome	153	Y
F046686	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100196961	F046686	GGA	VRAGLTTSQITNEARLLELLNSLESVVDNLNFKSFTAYDTLVTAMEGVRVALSNIATEE
Ga0114977_100196962	F044984	GGAGG	MTDEVEKRVATAKRKNVRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANSVPDVAGRTDYESADESYDGGEA*
Ga0114977_100196963	F001477	GGAGG	MSNIYTIHPPKSDLILFYEVVEAGGENTWGGADAGQAIQWLTHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVKAGSL*
Ga0114977_100196965	F000821	GGAG	MNEEYLKAKFDLCISQAEKDLQQEEIARAIKNLERANSALSRLFGLEEEAEND*
Ga0114977_100196966	F003212	GGAG	MKDKYLVTLEIETYDGDPKTWDWDVIFVGEDDIKIISSDFKGRVLPTEGESNE*