Scaffold Ga0114977_10019050

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10019050
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4312
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018135	Metagenome	236	Y
F029046	Metagenome	189	Y
F029678	Metagenome	187	Y
F075715	Metagenome	118	N
F093236	Metagenome	106	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1001905010	F075715	GAGG	MNKEYLAAKAELCSNLAQEQMVNGEGEEAVKNLKRMIRALEEINLINYLEERRGRQ*
Ga0114977_1001905012	F029046	AGGGGG	MQLQEIDTIQDLKVWVEENMPKAEVYEDMYGTIVIRTNLGASMGGYLFERGEEL*
Ga0114977_1001905013	F018135	N/A	MTIKRVQHTGAYVLSQFVGEGEGEYLFTRTYYGYTIKQAKEQFKTELKGAK*
Ga0114977_100190503	F100350	AGGAG	MIYAFKCDCGSTREIEQSIHAEVIEPICTDCHSSMSRIWSSPAVTFKGPGFYSNGG*
Ga0114977_100190505	F093236	N/A	MGSKETVPSPYGPVRAGLTTSPDHATLMASQLAQLSVLLSSLESVVESLNYKSFTLYDTLNTAIEEISAVLSGTVIEEDGTDV*
Ga0114977_100190509	F029678	GAGG	MSKVTGFTIFNKATGQKLATLPLSIPIGSTVDAYRREGHDVSWAWEEVND*