NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10013646

Scaffold Ga0114977_10013646


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10013646 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5134
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027829Metagenome193N
F035741Metagenome / Metatranscriptome171N
F079522Metagenome115N
F083794Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0114977_1001364610F035741N/AMNANDVIGKYLIAESNVPLFAFPGGSQIGMVNAGLVVGPVYSWIEKNNKLYWQFDYTIPGNAPGSYYAEHRPEFWKLSTTGSGGGAINLPTTSSLIPKWALPVALGALALFLFKNGSR*
Ga0114977_1001364614F083794N/AEGNTIVPKQQNKFTTPADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPAPAIAVNNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIENAEPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGSSDYDSL*
Ga0114977_100136462F027829N/AMAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKTYSFRVYIAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKAIVSAFNKLSSFIDTASPNLENKLSQELLTYDQWEKEYFERKNMGIIDINREEYKK*
Ga0114977_100136463F079522GGAGMNQNVTYGKEREAIVPYDVAIWWHQAFDVEKSIFNPTYIPADLVEDIHQLQRRSIIKALPDSDPGRKWLILRFFPEGI*
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