 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009158 Open in IMG/M |
| Scaffold ID | Ga0114977_10012502 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5371 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033418 | Metagenome / Metatranscriptome | 177 | N |
| F034068 | Metagenome / Metatranscriptome | 175 | Y |
| F056318 | Metagenome | 137 | Y |
| F056574 | Metagenome | 137 | Y |
| F097311 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114977_100125021 | F097311 | N/A | LQRRGGRPMNEREQIVYLRTALKNLAESADRYIDDGSWIEHVHLDVQFAKDVLRNTRLNKVEQGIRDAVGRSMKGEK* |
| Ga0114977_1001250211 | F056574 | AGGAG | MEQKSLFEKIFGTAPQEMVRNTDPDTSVSAANSVDSTQLESMVYEVIAKYPNGCTSDEVMRHFPHHGVQTISPRFAPLIRKGFIADTGERRKAASGRSQRVMKVIKND* |
| Ga0114977_1001250212 | F033418 | GAG | MKQRVYTIGVGDQVRLIRASNRRQAIAHVSLGIMTIRVATQEDIIHQLDKGIPIENYTAPEQIELEL* |
| Ga0114977_100125024 | F056318 | GGAGG | MFKHISSYPWTLGGSGLTVWGYEQKYGRPLVVNCDAKNERLPMPTATKRANARLISIAPQMYEIIQTMHGNSEAMALVAYMEKNHED* |
| Ga0114977_100125025 | F034068 | GGAG | MRIKTPKDQDFEKIYKAYAGLIDWIGGNDVDGQETLGLLLKAAVSIAVTNRLPKEDILEVVSVTYEMERMMRPDSGEVH* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |