Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10009322 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10009322 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6235
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (17.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6235

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (17.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F013298	Metagenome / Metatranscriptome	272	Y
F017485	Metagenome	240	Y
F027416	Metagenome	194	N
F054034	Metagenome	140	N
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000932211	F017485	N/A	MNNELKRKDILEGITFILMIVATLGMFCLLYEVTELRELTKSASNFRTIRK*
Ga0114977_1000932212	F054034	GGA	MLTISTFKKLEGLVLMDGLKVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIAGGTSAMTEFISIKTINTLDRMREQLIYIKEKYKTK*
Ga0114977_1000932214	F027416	N/A	MLTIENIQKLEGLKVGANGKVWKIIRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIKRAVERQDMVDVYNFLRLIKKEIERAVC*
Ga0114977_1000932215	F103248	N/A	MLTIQNIDKIINPKSPLPYKWHISAVDELPDDLYGFSVYINGKIENIFYLNRESRYMSGRNEPVYKLYKNFDQSKINRWLSLHQISPYFIKQAIDKMLNE*
Ga0114977_100093224	F013298	N/A	MNIREFYVKNYPSDDMGKGINPEATFDGLVHALSNCQDVYEYLYVYDSIIRERLFEKLSLILNCEYEVIYQRWLSPIKKPLIKK*
Ga0114977_100093226	F000785	N/A	MRVTNKKGMKFDCTRLMRWAEEKLGPSKCTAIAFTWESDEESCGWYDWDETIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYKKQK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10009322

Overview

Ecosystem & Geography

Associated Families

Sequences