Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10007393 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10007393 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6974
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6974

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002433	Metagenome / Metatranscriptome	559	Y
F005503	Metagenome / Metatranscriptome	398	Y
F011152	Metagenome	294	Y
F044361	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000739311	F011152	N/A	MQKMTISAADEWAIHKRAVDVVFSYSGQLGTTIRYNSKLNNHEQVTEYAESLGAEMIVARYFGLDYDINLSNGKRGADVGQGLEVRWTSYVGGNLIVYPNDRETDIAVLVVGKSPVYHIAGWLPVAFARRKRFKNPRQDSWWVDQANLNPIETLIRSEYATSAI*
Ga0114977_100073932	F044361	AGG	MTQWAPVWKVLIAGIEYTDVVLANLSISSGRSNIYTQAQAGYCTINLINLDLGAITAEINDAVSIQVKDTAGTYVPIFGGSIVDVAVTVSQTGSVAITQEVTITALGALARLQKALTLGVLSKDFDGDQIYTILEDLLVNNWSEVPAALTWANYTPATTTWATAENTGLGEIDRPGNYELANRGSSQTITWNLVADLATSGLGYLYEDASGLISYADSTHRSTYLATNGYTELDANQALGRGIKIQTKAGDIRNDVSIVWKSGTQTATSAASIALYGKLAQQITTSLEHSADALSQANFYLTLRAQPQAFLESITFALTNPEVDNADRDALINVFMGQPISLSNLPVNMQSGNFLGFVEGWRFQASFNELSVTLLVSPLPFSLQAMEWQDVSVAETFNTLSPTLDYADALVVN*
Ga0114977_100073937	F002433	N/A	MSVGEWTAVSGLVLAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEARLDQLMLEIALKK*
Ga0114977_100073938	F005503	GGAG	MTTSEIGLFLFMCLACILWSIVSYTMGYKEGHKEGYQRGRAVGRHASAQAVAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10007393

Overview

Ecosystem & Geography

Associated Families

Sequences