Scaffold Ga0114977_10004226

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10004226
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9174
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F006539	Metagenome / Metatranscriptome	370	Y
F042333	Metagenome	158	Y
F094891	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000422611	F006539	GGA	MIETTTPWIVLYCTLGYFIAWGIYSTIKDNAFQSGYWKGRKDGYDMHRRITDAKRDQVFDYDKN*
Ga0114977_1000422615	F002162	N/A	MPNYDYICDREGTSIVLDLPMQHEIPLCQVCGFELTRVYTAVPSIFKGTGWACKDG*
Ga0114977_1000422616	F042333	GAG	MDGYDTADGFRVYQCLKCCAIGTKNLAEATDTQEPVIRCNECGSWQFVDHPCHTCSLVNSK*
Ga0114977_100042262	F094891	AGGAG	MKITEKEFNAITGEETITERDETAAEKKQREAFAKEVAARQAEAQTKQAAKQAIADRLGLTADELTLLLG*
Ga0114977_100042269	F002044	N/A	MANTRKTTKRTKINRRVVRHTPDPTKIDAHYIALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD*