Scaffold Ga0114977_10004025

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10004025
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9397
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042878	Metagenome	157	N
F050332	Metagenome	145	N
F090332	Metagenome	108	N
F099195	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000402511	F099195	GGAG	VSEDDQKVRELFREAAKKEGKSLRGWCRENGIVYETLIGREMPSDLPLSAMHDHDGKYFGTCPACEKE*
Ga0114977_1000402512	F042878	AGGAG	MTKDFEVYFQGLYDEARDILVQRQGQYGPSNIENLGIPGVFSRLNDDKMSRVRKALNGQVVKGRTVLSADSKRELAHPSVRDALMDAANYCLILVSLIEEEWSQLELDPDSGESY*
Ga0114977_1000402517	F090332	N/A	MLRYEISRGARMIDDDLDIVQNGDICYLIDGRYGRIWAGLSLRYDSGTAPEGWFFLRETPENRVLNRELVAAGLVELGNKVEVGRRTVQLARVKRG*
Ga0114977_1000402521	F050332	GAGG	VAYDVWLSDKKEPKEKEFKTGNKAVEFFASRSTNEYQQWKSADKETRGQEPGGKYVYLTLTVFDKKTIEHLFKILYKTQESRTKNPNDKRPSVHVTGESRNVREYEGKAYEDVTVRDCSPLIWTPMEAKE*