Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10003695 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10003695 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9797
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (85.19%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9797

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (85.19%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003784	Metagenome	468	Y
F003863	Metagenome	464	Y
F009331	Metagenome / Metatranscriptome	319	Y
F018135	Metagenome	236	Y
F027417	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000369513	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWSISPDSRLTVGIHTRANGAPPFGDPADAGEDEGNYGGEA*
Ga0114977_1000369514	F001477	AGGAG	MSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL*
Ga0114977_1000369516	F000821	N/A	MGKGRIMNEEYLKAKANLCLNQAEKDLQQEEIARAIKNLERANSALSRLFGLEGEADDN*
Ga0114977_1000369519	F027417	AGGGGG	MNYDYRVTFVTDYLTITTNVELDLDDYTGNCSGEAYSQATFNAMNNIKDEIGRIDENIINDITVTLILDDREIELGEEE*
Ga0114977_1000369523	F018135	GAG	MRVKEMTIERVKHSGAYVISEIAGEGKNAYLFTRSYYGYTLKQAKAQFKLAIEGEAN*
Ga0114977_100036953	F009331	GAGG	MMCDNCLKAGEENGLAHYKRSTQWHDKCDYKGCVCQHKTGPGYVRRAGIKVPLMQTQSP*
Ga0114977_100036956	F003784	GGA	MYDNDRERVGHNATDFAAYGLSHLAAGQNNTTHTHTPTTNPLVDHAAVTGYRAVGVSTEDLTSFIESFASLRAQRVKGVGHSQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDQVLPDCE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10003695

Overview

Ecosystem & Geography

Associated Families

Sequences