Scaffold Ga0114977_10003285

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10003285
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10373
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F010237	Metagenome	306	N
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F023058	Metagenome	211	N
F047052	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000328512	F047052	AGGA	MKIKLTLTRGDKKETLITNLFAISEWERLENRRVSDGRGIGASDMACWAYIMLGIKGETLPATWREWLKANPDVEIGVEDATDVNPTDAATGDNSLNL*
Ga0114977_1000328514	F010237	AGG	MAVPNYTDLFNEGFDDLVAKLSTVSGLQINNDPRNITPPSCFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVSTVVQTA*
Ga0114977_1000328515	F013988	AGG	MASYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITNVDATFNGTYIVYALPQYAFMGVDDEGDLLFDPLVTIPNQVLYAKTASDVARTAASGTLTITQTCTWVTSAMLEDWLGIGTATAADAAFLTICASACSQFAWRRRMESGYIDSLTTVPSQDVLLGTQMYGGALYRQRGSVDQFASFQNMGVTPVSGLNGMIRQLLGIDRPQVA*
Ga0114977_100032852	F011919	AGG	MNDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSVSAALNALPKSGSKRRKVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATELERPTIAGNMAIVWKAR*
Ga0114977_100032853	F000722	N/A	METLEPSEVTEEPYPEIGITEETRQMYPENYSDKYNKVFKEFLDDIVRPHHVARPIDRLDDHEILLDELTIIYDAHMTIGGEQNRFNASVIRAAINCIRAYSA*
Ga0114977_100032859	F023058	N/A	MAGVAVIGSGNYDLEIDTGYMWDAFTLDDDLKGELNNTEYVLNGVSQYASVMDGTIGLTAKRGRQNTGDQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANNQPGLAPLRQVRFSRYDSLNVKKYLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEQLSSVRFNDLLDLPEVAYTGTRSIETGVATLGGAAAYTVANGTSVAGYANKINEAEQGRIFVDREGTITFQKRLGTTLGVPVAEFHDDDTNIGYSAIDISFQADTVVNRASIQHAGATSPQVAEDLVSQAAYLVQTKSITDSLLHNDAAALTLAEYLISPDPEARFNFLGTEFPGLSTADQETLALLDVGDLINVQKSITTSAGPSQFAQDLTIEGLEHRLTLSSGHAVTYYTAPTTIVYELILDDITYGTLDTNNVLG*