Scaffold Ga0114977_10002793

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10002793
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11225
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F036674	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000279313	F036674	N/A	MAVRDFDPTQLSTDFDAILSQAGITFSFLGASVTGVWSSSRDAFADFENQRRDESKFTVFLTTSQVSTTPAQTQTLVRNGVTYFVEQVRFDAEGTGVEMDVCKVI*
Ga0114977_1000279315	F014606	N/A	MSTRTDIRNAIGTALTTAGVVVTANLIRGRNNTIASVSFPSAAVYAINEQIEVRTMPIGRGEQFRQLQVMVDYFTAQTSATIIDDLFDTGSAAVEAAILADPTLGGACRDTHLTSVDYVIEPDEDKRWGVARHTFNCIYLTTE*