Scaffold Ga0114977_10002042

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10002042
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13086
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (67.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001280	Metagenome / Metatranscriptome	732	Y
F007921	Metagenome / Metatranscriptome	342	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000204219	F007921	AGGA	MIDWLVNRIFRWDPLRKAVFDEVRLYQSVDRSLWEYEKERPTNLTWSEGDRWYGWTYNINSKRYYFDDIGNKSLMGLWEDQWLREADDNKA*
Ga0114977_1000204229	F000441	AGAAG	MSDTYLNDQLNTAQKLLWGGSETENIEAHNIIAKLISDRIEQADLL*
Ga0114977_100020427	F001280	GAG	MCYECGCETVGSNKGASPITIVDVSRDGESGLTLGMVSTPEQTRQFINE*