Scaffold Ga0114977_10001910

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10001910
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13648
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F014617	Metagenome / Metatranscriptome	261	Y
F026267	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000191016	F008130	N/A	MVETPTIGDAMADAKTYIYEVYTTHLDSSQMVLVQIFRDPDTDKVLHAQIAFKDAIGDSWQTPYQLEKK*
Ga0114977_1000191018	F000722	N/A	VESNNVSETPYPEPGISQETRAAMYPENYSDKYNKVFKQFVDDILTPVLPIDRLENHDILLDELELMYDAHMTIGGQQNRFNASVLRAAINVIRAL*
Ga0114977_100019106	F014617	AGG	MIYTIASTRLGIIGDPYVPADGINVAALLSGGFIVEQSTPKPKKPAKTSTEPNEEI*
Ga0114977_100019108	F026267	AGCAGG	MKVKLELDLQDGRGTRTMTTNMFVVCEWEKLENRKVSDGKGIGYSDIACWAYHLCKLAGDTVPDNWREWVKQHPNMELTSVDETNPNPTALALTEDN*