Scaffold Ga0114977_10001537

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10001537
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15137
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (74.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F004950	Metagenome	417	Y
F057167	Metagenome / Metatranscriptome	136	N
F060718	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000153715	F057167	GGAG	MNVELDYITEQLHAIDINLEDVNRGMTPSGYLTINSYLEDMRYRLSEITNEILTMEV*
Ga0114977_1000153724	F004950	N/A	LRKEKLKLGKGSTRRPLLISEQEAKDNWDKIFKKDYEYELNKSTGEVEKRFKEGTSKPNGEQFGD*
Ga0114977_1000153738	F003066	AGGA	MKKKPLAFLYEEYDVKSGDLLKSYLWSFHPNQLSYLNDLKNTTHHIKITPLIAGEPIEEYKGISKYDSKKLVEAYGGD*
Ga0114977_1000153742	F002037	N/A	MNKIYIVFIIVMAGLAVWGTEKALADTTTIFAPDGTVTVCTRGKDMIICV*
Ga0114977_1000153746	F060718	N/A	MIVLNIMNWIGLTILKFLIVSLLFGAMGFSIIFMYAMQYLTQALHYVDKNVN*