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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009158 Open in IMG/M |
| Scaffold ID | Ga0114977_10001367 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15970 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (58.82%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008244 | Metagenome / Metatranscriptome | 336 | Y |
| F026563 | Metagenome | 197 | Y |
| F035769 | Metagenome / Metatranscriptome | 171 | Y |
| F037225 | Metagenome | 168 | Y |
| F090371 | Metagenome / Metatranscriptome | 108 | Y |
| F099305 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114977_1000136712 | F035769 | N/A | MKKILGMLLVFLGFSTDTYGTELEKYIVGRNPQDIGDIERLTYEFHRKQSNWRFL* |
| Ga0114977_1000136713 | F008244 | AGGAG | MFNTATYAFIDGVSDFKKKFVEQTVQHEGIKTAMNSFVDAQAKYTKSAADAGMQSMMALGMIFTSKDFYTEMGDQFKTMVPAFNTKKAKK* |
| Ga0114977_1000136719 | F099305 | N/A | MIHIKRFVDKITLIEGKQGRDVVIPISEARGLRDELTKLLVDNYELLQNTNKVEPVFQVEMNGGRF* |
| Ga0114977_1000136726 | F026563 | N/A | MNEKVELYCTQNDEGQWLVWFPHPLGGMDVLESFDNESDAKIFYQQQLNDADYT* |
| Ga0114977_1000136729 | F090371 | GAGG | MSHQEFESNVSYLVRPLLNDNEHAGFFSDTGTLFAECSENTARSIFHRLSKEFGVGKVQINGPINGEYSYDFE* |
| Ga0114977_100013673 | F037225 | AGGAG | MNKDIEILFKQAGGYVEVDSEGNRFTYTQDFDPDTFASLIIQNCIQTLVNYGYTDAATVLETEYAEDWQKMEFPEI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |