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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009158 Open in IMG/M |
| Scaffold ID | Ga0114977_10000764 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21256 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (70.59%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017969 | Metagenome | 237 | Y |
| F027776 | Metagenome | 193 | Y |
| F056414 | Metagenome | 137 | Y |
| F078415 | Metagenome | 116 | N |
| F079788 | Metagenome | 115 | Y |
| F080978 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114977_1000076410 | F079788 | GGAG | MDTDDEIESWASIVLGLIATLFFFIGVVAVIVSACMAWGYYTYEPLCGTVAALFTQECKLT* |
| Ga0114977_1000076411 | F017969 | AGGAG | MIHILYIPVLFVCMNGNCEFMQAQTSYKSEQQCRASIDVQKENLQKMALKGGQMVTLIEGTCITLKGGML* |
| Ga0114977_1000076420 | F078415 | N/A | VRWLIPIVLLSFVYGATVKRECSVSDFVNIAYSVHDSKERHDRILEWLDDSGQVCTKEQLVLIYTNLAQVLGAADTMRVRTKIDKLYERAK* |
| Ga0114977_1000076434 | F080978 | N/A | FELTVINLGTSTGLITMAVGTGITAVGNLVVAITGSAAGVGGAGQFLFRKTGDAAYTVYRIA* |
| Ga0114977_100007647 | F056414 | GGAG | MKLTDYQRNQLKAAACFGGDQIDMVAASLQRENPDAFLRESELHQRNFYHEPKSYGSPVPHRSYVQRLVVRRREQDNEQRQVMDQNHYLQQTFQIGVGA* |
| Ga0114977_100007649 | F027776 | AGGAG | MMNPLEIEIKRTVFAHLPAVGNIGLISREELATMLHTACTDAALAGWARGTETAQKRLDQELEILRQELKAIQTELAYAKAN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |