Scaffold Ga0114977_10000750

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000750
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21441
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (64.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F041636	Metagenome	159	Y
F057002	Metagenome	137	Y
F063629	Metagenome	129	N
F079388	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000075010	F057002	N/A	MLQMRSALTFTKESLHPSDYAGKRFDQALHDKYDPPARKAVTDWMKMKWGLECRENPNVYGVDLIAYREGNLVGFVEVEVRSWSFCHHPTIHIAHRKAKLFQQDRPVLFFALTHDLSHAYWMKAKLVKECPLVEVKNREVPSGEFFFDVPVGHFKYVDLTDPF*
Ga0114977_1000075014	F079388	N/A	MEKTKVINKKCLEAFNSLSEPVYHPQEYFMLGWNAAIDALSAEFSRKWEMSELEDIDFIVHPEQEPMHDDE*
Ga0114977_1000075018	F063629	AGGAG	MNTVVNTPQTSSFDRLMAEFGTIKTLCEKIGVKYVTAYAWKMRNGIPKKWHKSIIEASEGRLTENDLG*
Ga0114977_1000075027	F004362	N/A	MESRLKNWAWYVTWGVIGPQVDTTCRSFEKNYVPELGNLYADPEPHYEPDHVDGDLIEQAIKGLPLQLRQVLKMRYVSHPYASLNQLAHNARTTPHKLETDLHNAKKRLQHELDKKSKSNHYQSLCKVQAQKNN*
Ga0114977_1000075030	F006502	N/A	MKPQKTTIMIGLLGDKPKMGKKEEGGLLAEDKSSCPLATQDADINKGNMKKAILTANYGEKGDGEGKCKACEYFCTPKEMPDCGLEKTMGYCEIYDFMCNQNNGCDAWEAIGKEEEMEMEDEE*
Ga0114977_100007507	F041636	N/A	MANLTEKEIEDIVEKVTERVIENVYTSVGRSVVTKLFWTVGVAAIGVVTYLAGVGHIKIGS*