Scaffold Ga0114977_10000703

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000703
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22153
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017271	Metagenome / Metatranscriptome	241	N
F020651	Metagenome / Metatranscriptome	222	Y
F043816	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000070318	F017271	AGG	MTDEEKKLVPILIKGFSTKTKDNPIKAPEIVQTINGKRDTLGLKLNFSEVRLRKIVNFIRAEGILPLIATSNGYYCSNDKEEIKSQIESLTQRAEAIMSSANGLNKFL*
Ga0114977_1000070319	F043816	N/A	MKELIKLREWVEQQCKTDQPFSCADILNKIDEMCETDDDIDNLLLTSCYEME*
Ga0114977_100007036	F020651	N/A	MNIAVILLNLNRNHLAKRVVDQNFKNAGHNADCFLVDNGSDEVPYDIYNWTNCNVSTKKRGIAAGVNAGLNMTRAYDGVCILANDILLPDNWLSNWVMFSERVSKTGIIGIHCVEDLPPLVDGIHKTHVPFGDNFITRELIDTIGGYNTEYDPYGMQDRDYAERAIIAGFTNYYIPDLRSEHIGHDVGNGTEYRQMKDESLQRAQAVWEKYQPIYHTEKKLYADFSNNK*