Scaffold Ga0114977_10000401

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000401
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29354
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (28.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000040114	F093876	N/A	MNLFKRKKEPIDLNAKLLPELCSCTIIQWNYSEDIGLESTYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLALMQGIDSAIVIDVPYNQFKKNFQELKSNIITNDYIISRG*
Ga0114977_1000040117	F072341	N/A	MSKELAASVQQSFNRSLSAEEKAIAECISSPKLHSLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALIMTFPEIKRAEPTDPVNVLHADLERWNDGKHTWVEISAPYNCQRLFKQGIYKKSMWEPEVWARFEDIAKQKVEAKFKASNRVILGESAQAEFDGLQKIELSRLIYIDIIKQINKEKE*
Ga0114977_1000040123	F066778	GAG	MRAGAHTFKITPMNYSREPNWQKLKPTIDWDEQEEKLANKLENYINQNKQIVMNQQIVKQQKFVRTWNGPSGEIHYFDLVLENGEIGQIGVKDMNSPKIAVGATLHYTVEERTGPTGKKSTNFKMQNPMQFSGTTSAPSGAVNSAPNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGEAVEAVQIKALTNESADDEMPF*
Ga0114977_1000040128	F070109	GAG	VSLTTNEVRSLLKLKAERDYLQGQVTLLSKSDKIASSVIKDQQKAIDAYSISNEQKAQQLVKVQQELYKEAARKESWRNVALIGIPISFVGGIIFNILF*
Ga0114977_1000040129	F077297	N/A	MTHQTKTQIKAAAVIVVALSICITIQCLYIALKDSKKAIQGYERRADRATHVIDSLEATNVQRMQEIAQLNMQIEHNTKRYEANISAIDSLDRNGLKRAMRNLLTSLAGERYPGESND*
Ga0114977_1000040140	F082692	N/A	MTNPQQDIIYSMTLLRSGVQGKSQEFKHASGTYHARLKVWQIRAINYTILIGLLSLITYTIYSVI*