Scaffold Ga0114977_10000231

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000231
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36692
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (11.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026554	Metagenome / Metatranscriptome	197	Y
F041198	Metagenome / Metatranscriptome	160	Y
F101172	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000023123	F026554	N/A	MKLDINEIYHNYIIKIVIFALFLYKRQIRQPNVYKVSVIKFTIKRLAWKINLVIDTGIKLDKEEEREILLEELLNGVESDYLSTVTVTFTTPLKETTMLIDLSDERKYEEYLYS*
Ga0114977_1000023139	F101172	GAG	MSYLNEIKAYMRDINLDILMNCPDVKIDISKRYNNKFRLFYPSRKLIKYVTNIGGVLVGSRAIRCFTIEGKPILERRVNDWDFIITLDMAFKICDDMGIEEIPQVDNVISVKNQRMWRHPDYSDSYRVGPVDVQLIVKEELPDYNEIDGVRIANFGYSISQKIGMTTDLQSKLTGKPRTKSSEKYDSIDEQYYKHISDLKEMIIKFNSLKWKQPV*
Ga0114977_1000023141	F041198	N/A	MNKVICIDNLNILSLTVGKIYDVIEITRIPFSPSRYDNYTGPIYKIVTNTGEVSGYSDECVRLLTLDELRELKLEDLGI*