Scaffold Ga0114977_10000008

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000008
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 171004
• Total Scaffold Genes: 244
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 158 (64.75%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F012867	Metagenome	276	Y
F014736	Metagenome	260	Y
F016150	Metagenome / Metatranscriptome	249	Y
F036593	Metagenome / Metatranscriptome	169	Y
F044494	Metagenome / Metatranscriptome	154	Y
F050374	Metagenome	145	N
F058149	Metagenome / Metatranscriptome	135	N
F070115	Metagenome	123	N
F077308	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_10000008112	F070115	GAG	MSKFTHKTERYFGSKVNIHTVSWKGQDDIDTKEIKKWCKKNYGNSGYDDETGSNRWVDNIKQCEIMLTRDEDLTMFLLRWE*
Ga0114977_10000008126	F044494	AGG	MKFKANAISTLYFKVSVKKRPYSNEEICLLIAASDYTKLNAKDKVMLGKTLYFRELPLNTEQSIIDWHVENITKVNNYSVSQVL*
Ga0114977_10000008167	F058149	AGGA	MFTPDFYIEMFQTSKRMATNQIFKDERLNKVANDFIDAQTIFAKMMAKNTIEMLSYTVDSMNKTIYSQGEDETVKAKTAKK*
Ga0114977_10000008171	F016150	GAGG	MTEEKKKNPIAMALEAKKKNAMANSGLGKAPKSKGPKANSKGFGGASVVRRAGRGG*
Ga0114977_10000008174	F077308	N/A	MFHIKRFIDRVAVIEGRQGKDVVIPLSDARSLRDELAKLLIDHYEVTEGKKNTSEVIEIEVIGGKF*
Ga0114977_10000008177	F036593	AGG	MIQLNFNIVNPRRTNKVWNILWSKYGSITKNKAWEFNGYRTGHIINIEFQLTFQSDHAGARLMLGLFGYEVELDFYDTRHWNYDQNTWESYK*
Ga0114977_10000008179	F014736	N/A	MWCDPRFQMLAVVDKLLDGDKTWSGFEYTYHPIDPVKYRPVAEQVRKALEALKKEYGVEE
Ga0114977_1000000832	F012867	GGAG	MNDFMYEQQRESITEDWGDEISLALLSEKLNLPRVSYRIYYSKDNLTRRIFIFRGNCTPAETAIMLGLGFTFASDGDTENIPDQPVEEVEEEVKE*
Ga0114977_1000000833	F050374	GAGG	MIDYKFIGWKNTDGSDKVWGAIYMEDRTKIRPKVLIFWGRRGKKLQTKMDREGWDLDKLVREKQGKGYNTIYDYELKTVYPEFESDLEKTTMWALLKL*
Ga0114977_1000000860	F000324	GAG	MINIGPTHLFNYNGTSFNVYHANKGEGLPRHEHTFSHATVCNAGSCILRKEGREKVIDKHTQPIDLAANEWHEIEALEDNTVFVNIFVNE*