Scaffold Ga0114977_10000005

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000005
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 189328
• Total Scaffold Genes: 233
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 173 (74.25%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F007028	Metagenome / Metatranscriptome	359	Y
F007312	Metagenome / Metatranscriptome	353	Y
F009209	Metagenome / Metatranscriptome	321	Y
F021091	Metagenome / Metatranscriptome	220	Y
F026542	Metagenome / Metatranscriptome	197	Y
F097447	Metagenome / Metatranscriptome	104	Y
F098749	Metagenome	103	Y
F099177	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_10000005134	F007028	GGA	MPKISKTAMEQSLDSPIDQVVNILSSEISISTNPVFICGVNRKINIGNFENIDVYAGITLPLNEVSLEDKDKLTEIIEAAASYGFSIVSKETGERYQLIKESQQGK*
Ga0114977_10000005138	F026542	GGAG	MNLQSMEKLQELLQNFLGPQLKEVIEAYADVEKNSKYFVEIPEVDIIDLGIDTIASLVARTSNVYGRAARFAGMSRAQYKIIEGNYKRVYKSNRAGKNEAEREASAMAAAESQHTEMITCEAIMSLAESMETSARIASESARKLMDKMQSMQVAAFREEKGSYLESDFSTY*
Ga0114977_10000005139	F099177	GGA	MTAYKEQYYSLEENEMQDLIAKAKKGSAKAQEELLKVFSNFLTKYISLLYYGKFNLNDYDIRRFISLFIKDSGTRFALMKNKMSGSNMRVINECMRGIHYMAKRYGDEEDIRQTVYMTFFQCIGRYERKDSAKGPIPFSGFLYSYFFYLLKKNVDTFLIDQLGRKTFPLLDDDATNDEGDENYVIGFKADPVEYSMEQLLAADKIDEFWVLGEKNIPPFDRLTVQERQLLKWRYVDGQRSSEISQKVNEHPNTVREHLSKIKNKVKDLILENDLNEYAMLINMEKN*
Ga0114977_10000005171	F007312	AGGAG	MATFYVGPRPVLKGRTTAGMVNPYTSMTGKAKGTGTYSFYPLYSTSHVLDGAPDNHNIPGTGNRPGNRFLSQVFNGTTLYIHPLAGLFQDGAHYEGSRFRPMEFKGLTGAKAFPSIFGHESGRVTTYSFYNNYIFDGVTSANIFSNTGHGQRTEAQGAPSSFGFFQPTEFHGVASVKAFPTTFGQANDPSDYGRKKVKQWFGVASAQAL*
Ga0114977_10000005194	F097447	GGAGG	MAIPGVTTLIRDRFYSVSRQDAPVGPRIVTIAKRSTADGTGGVPDLDVVRVSNEADAITAFGSGSDAHRSFLELVTAGAERIFIVPLPSDTVFNHTLCTVTSATFGGSVFDAAFVAAESAVPDMIIPWGRGSEANDWNANAATPSDDREYGFHADNNSAYATNWAYKVGVAVKTISENTNPCLGIMGVKPFLASTTLGGTATYERMTPSQTATKLSLTGLPDRDAGDAWKSVGPYISIVATEIKPVNYKSGTTDFGYSNGAAFLAASLSRLPSYSSVVNKPLYNVEALRYAPTRTQQQALSTKGVNTVVLNFNKVAVFGEGLTFGQTTSDYTRLSTKRIVDEASLVIRQVCQKFIGEPSNIQVRNAMETAITSGLRGMQLMGALLGSDFTVSYVPNQNKAIVDLILTPAFELKTIEVQVAINL*
Ga0114977_10000005205	F001360	AGGAG	MSLAKFRKVHSKTGSGRFVVSEGIAPAAYLLPHPGLPTWYYDTEDNRFEIVIPKGTILSVVADSNGDARVVPANGTSSSKSWGDNMSNTAWDPTAGATPAYSSGATDTVTVPARSIPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVSGINNDVTVGSVVRSDVMGRPVLAAATDFFSGSSAYSYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTKAGPNNGKLGIRSNLDVTNVIGAFRVNLTL*
Ga0114977_10000005207	F098749	N/A	MKLLIGTPMYKRSWILPHWIRCLINQSVNFKEIGFVFEVSPDDKETIASLEAWKRFDKNIPYFEIKVREDIPHFEHSNNGRQWNISKYVNMVSLRNSLLQTVRDVQPDYYFSLDSDILLTNPNTIELLIAHIKSGADAVNPLMFMTPIGTLYPSVMDWRQDDPSKAYRKEKYELGKYFQSDVIMAAKMMSKDVYNNISYNVHQQGEDVGWSLACKQENFKLYCASYIYAPHIMSEVFYQSFLQNGDDRYESLSDNYAKV*
Ga0114977_10000005223	F021091	N/A	MNDWKKFTDVNGDFQLANFLYKSINDLMKHSLDMGTLLSSDSHKLRAYKEQTKKLFKNKWFEIAQSLEFFDIIEKCICYNEVQETYCEVCKGARYKLSSYLNSDEIREIGIFFNAAQNADLAGKLQKGLMKALDELS*
Ga0114977_1000000558	F009209	AGGA	MSDTFDNAEEFLSSLEGIKDPVKTDTKDYQQDLYKKWFRSKTQSGFLAIRPWNEALKMKIDIGKTSSEGKLQSSTAVFVDTIDFAAYLRSIANQTAVINYPANERMGVPTNEGFVSYGGTTIDGKPISRIFKAHYWQTSDAVDATSFVWKCGHFAARKSDSGAFIPDMKTPLSVDQIKVSRQDICSISYLMDLSMVSYVTNNQDWYEQ*