NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111538_11845314

Scaffold Ga0111538_11845314


Overview

Basic Information
Taxon OID3300009156 Open in IMG/M
Scaffold IDGa0111538_11845314 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)761
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058236Metagenome135Y
F089481Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0111538_118453141F058236N/AVAVMIALIGFWTVKGYVRRWYANDYDKLPEGALVSDATTLSWLGLRDKGWFCEEPHYKGRLLHLRHKVFQPKDVIIFVHGFIGDYVNTWGKPSVLLDDPRFNRNYDFVFYGFKTVLYGDVPAFDEEAAK
Ga0111538_118453142F089481N/AFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSELGRWMLENNLMEYYSEPMIKDLREAAGATGSSPTPPTSTR*

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